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For research use only. Not for human or veterinary use. Not a drug, food, or dietary supplement.

SS-31 vs MOTS-c

SS-31 (elamipretide) and MOTS-c are both peptides linked to mitochondria, but in different ways: SS-31 is a synthetic tetrapeptide that binds cardiolipin in the inner mitochondrial membrane, while MOTS-c is a 16-amino-acid peptide encoded in mitochondrial DNA 1,6. SS-31 received FDA accelerated approval for Barth syndrome in 2025, whereas MOTS-c has no approval 3. This page compares the two as of 22 October 2026.

Unbranded reference vial illustrating MOTS-c; not an actual product
MOTS-c
Not approved — research use only

Side by side

FieldSS-31 (Elamipretide)MOTS-c
ClassMitochondria-targeted tetrapeptide; cardiolipin binder 1,3Mitochondrial-derived peptide 6
Origin and structureSynthetic aromatic-cationic tetrapeptide 116 amino acids encoded by a short open reading frame in the mitochondrial 12S rRNA gene 6
Proposed mechanismSelectively binds cardiolipin, stabilizing cristae, reducing oxidative stress and enhancing ATP production in preclinical models 1Inhibits the folate cycle and de novo purine synthesis, leading to AMPK activation, with skeletal muscle as the main target (mouse and cell data) 6
Half-lifeNot stated in the label sections reviewed; metabolized to inactive M1 and M2 fragments excreted in urine 3Not identified in the sources reviewed
Highest human trial phasePhase 3 (MMPOWER-3, did not meet primary endpoints); approval based on a 12-patient randomized crossover trial and its open-label extension 3,5No human exposure data identified by FDA 9; human data are observational exercise measurements 7
FDA statusApproved as FORZINITY on 19 September 2025 under accelerated approval for Barth syndrome (patients at least 30 kg) 3,4,11Not approved; on FDA's significant-safety-risk compounding page (nomination withdrawn), with no human exposure data identified 9
Published human outcomesNot superior to placebo on the Barth trial's primary endpoints; knee extensor strength improved in the open-label extension 3Exercise raised endogenous MOTS-c in human skeletal muscle and circulation; no interventional outcomes published 7
Safety signalsMost common adverse reactions are injection site reactions 3FDA lacks information on whether it would cause harm in humans 9
WADA statusNot named in the 2026 List 10Named in S4.4.1 as an AMPK activator; prohibited at all times 10
Evidence levelRandomized human trials in rare mitochondrial disease 3,5Mouse and cell studies plus human observational exercise data 6,7

SS-31 (Elamipretide): what the data says

Elamipretide (SS-31) is a mitochondria-targeting tetrapeptide that selectively binds cardiolipin in the inner mitochondrial membrane; in preclinical models this was associated with stabilized cristae, reduced oxidative stress and greater ATP production 1. Biophysical work showed that SS-31 partitions into membrane interfaces and modulates surface electrostatics 2. The FDA label describes it as a mitochondrial cardiolipin binder 3.

FDA granted accelerated approval on 19 September 2025 for Barth syndrome in patients weighing at least 30 kg, based on knee extensor muscle strength as an intermediate endpoint 3,4. In the randomized crossover trial underlying the label, elamipretide was not superior to placebo on the 6-minute walk and fatigue primary endpoints 3. In the 218-participant MMPOWER-3 trial in primary mitochondrial myopathy, the difference in 6-minute walk distance versus placebo was -3.2 m (p = 0.69) 5.

MOTS-c: what the data says

MOTS-c is a 16-amino-acid peptide encoded by a short open reading frame in the mitochondrial 12S rRNA gene 6. In the founding study, it acted mainly on skeletal muscle, inhibited the folate cycle and de novo purine synthesis leading to AMPK activation, and in mice prevented age-dependent and high-fat-diet-induced insulin resistance and diet-induced obesity (animal data) 6. In mice of several ages, MOTS-c improved physical performance, and in humans exercise increased endogenous MOTS-c in skeletal muscle and circulation 7.

A 2023 review reported that plasma MOTS-c declines with age and that no effective method of applying it in the clinic had yet been developed 8. FDA states that it has not identified human exposure data for MOTS-c by any route 9.

Key research differences

  • Origin: SS-31 is a designed synthetic peptide, while MOTS-c is encoded in the human mitochondrial genome 1,6.
  • Target: SS-31 binds the mitochondrial lipid cardiolipin, while MOTS-c is reported to act through folate-cycle inhibition and AMPK activation 1,6.
  • Approval: SS-31 is FDA-approved for one rare disease under accelerated approval; MOTS-c is not approved 3,9.
  • Human evidence: SS-31 has randomized trials, including a negative phase 3, while MOTS-c has observational exercise data 5,7.
  • Sport: MOTS-c is named in WADA's S4.4.1; elamipretide is not named on the 2026 List 10.

Where the evidence is limited

No study comparing SS-31 and MOTS-c was identified. SS-31's approval rests on an intermediate endpoint from a 12-patient crossover trial and its extension, and continued approval may depend on a confirmatory trial 3. MOTS-c evidence is preclinical apart from observational human exercise data, and two authors of a key study disclosed being consultants and shareholders of CohBar, Inc. 7. FDA has identified no human exposure data for MOTS-c 9.

Frequently asked questions

Are SS-31 and MOTS-c both mitochondrial peptides?
SS-31 is a synthetic peptide that targets cardiolipin in mitochondria, while MOTS-c is encoded by mitochondrial DNA 1,6.
Is SS-31 FDA-approved?
Yes. FORZINITY (elamipretide) received accelerated approval on 19 September 2025 for Barth syndrome in patients weighing at least 30 kg 3,4.
Has MOTS-c been tested in people?
Exercise was shown to raise endogenous MOTS-c in humans 7.
Did SS-31 work in primary mitochondrial myopathy?
In MMPOWER-3, elamipretide did not improve 6-minute walk distance or fatigue scores versus placebo 5.
Are they prohibited in sport?
MOTS-c is named in S4.4.1 of WADA's 2026 List; elamipretide is not named 10.

References

  1. Elamipretide: A Review of Its Structure, Mechanism of Action, and Therapeutic Potential International Journal of Molecular Sciences. 2025
  2. The mitochondria-targeted peptide SS-31 binds lipid bilayers and modulates surface electrostatics as a key component of its mechanism of action Journal of Biological Chemistry. 2020
  3. FORZINITY (elamipretide) injection, prescribing information (Stealth BioTherapeutics) FDA label (DailyMed). 2025
  4. FDA grants accelerated approval to first treatment for Barth syndrome (press announcement, 19 September 2025) FDA. 2025
  5. Efficacy and Safety of Elamipretide in Individuals With Primary Mitochondrial Myopathy: The MMPOWER-3 Randomized Clinical Trial Neurology. 2023
  6. The mitochondrial-derived peptide MOTS-c promotes metabolic homeostasis and reduces obesity and insulin resistance Cell Metabolism. 2015
  7. MOTS-c is an exercise-induced mitochondrial-encoded regulator of age-dependent physical decline and muscle homeostasis Nature Communications. 2021
  8. MOTS-c: A promising mitochondrial-derived peptide for therapeutic exploitation Frontiers in Endocrinology. 2023
  9. Certain Bulk Drug Substances for Use in Compounding that May Present Significant Safety Risks (content current as of 04/22/2026) FDA (Human Drug Compounding). 2026
  10. International Standard: Prohibited List 2026 WADA. 2026
  11. Drugs@FDA application data queried through openFDA for elamipretide (FORZINITY, NDA 215244, approved 19 September 2025) (queried 22 October 2026) openFDA / Drugs@FDA. 2026

For research use only. Not for human or veterinary use. Not a drug, food, or dietary supplement. This page compares published research and is not medical advice or a recommendation.